Ahmed Elmokadem, Ph.D.

Senior Scientist II

Ahmed earned his PhD in Biomedical Sciences from the University of Connecticut. His thesis work revolved around building statistical models to solve problems with super-resolution imaging. Other fields of experience include systems biology and pharmacokinetics. More recently, he focused on developing physiologically-based pharmacokinetic (PBPK) models to get a better mechanistic understanding of drugs’ pharmacokinetics.

Recent publications by this scientist

Pharmacometric Machine Learning: Integrating Neural Networks for Flexible, Advanced Covariate Analysis

June 13, 2025

Presented at ASCPT 2025 Annual Meeting. Neural networks can be integrated with traditional pharmacometric models using several free open-source programming languages. Both Julia and R environments are suitable platforms, but there are tradeoffs regarding development speed, built-in capabilities, and documentation. DCM simplifies the covariate modeling process and uncovers complex, non-linear relationships in computationally efficient workflows.

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Symbolic PBPK-PDE Modeling using Open-Source Julia Tools.

December 6, 2024

Presented at ACoP 2024. The poster introduces a framework for developing physiologically based pharmacokinetic (PBPK) models that incorporate partial differential equations (PDEs) to account for spatial drug distribution, using open-source Julia tools. This approach simplifies the integration of spatial components into PBPK models, demonstrated through a case study on naphthalene diffusion, and is applicable to various pharmacometric models requiring spatial considerations, such as topical, inhaled, and antitumor therapies.

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How to Make a Salad? Rethinking Pharmacometric/QSP Model Composition using Open-Source Julia Tools.

December 6, 2024

Presented at ACoP 2024. The poster presents a framework for pharmacometric and quantitative systems pharmacology (QSP) model composition using open-source Julia tools. This framework allows for seamless integration and reuse of independent model components, facilitating the creation of complex models from simpler ones, and demonstrating applications in drug interactions, viral dynamics, and bispecific antibody modeling.

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